PH01000334G0560's details annotation
1.Annotation
ICBR annotation: BZIP protein, putative, expressed
Blast result AT5G25590 : 2.00E-158
Blast annotation: Protein of unknown function (DUF630 and DUF632)
2.Location
Scaffold: PH01000334
Strand: +
| Region | Start | End |
| gene | 411042 | 419979 |
| mRNA | 411042 | 419979 |
| exon | 411042 | 413110 |
| exon | 416183 | 416358 |
| exon | 417469 | 417692 |
| exon | 418108 | 418887 |
| exon | 419079 | 419127 |
| exon | 419539 | 419979 |
| CDS | 412651 | 413110 |
| CDS | 416183 | 416358 |
| CDS | 417469 | 417692 |
| CDS | 418108 | 418887 |
| CDS | 419079 | 419127 |
| CDS | 419539 | 419778 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000363 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, 3-dehydroquinate synthase activity, ribonucleoside_binding transcription, DNA-dependent, DNA-directed RNA polymerase activity, |
| coexpression network | CFinderM000527 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, regulation_of_cell_cycle aromatic amino acid family biosynthetic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding |
| coexpression network | CFinderM000788 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, B3-ARF Transcription_Regulator(from iTAK) ARF Transcription_Regulator(from PlantTFDB) cytoplasm, protein complex, aromatic amino acid family biosynthetic process, response to hormone stimulus, protein polymerization, Plant_hormone_signal_transduction |
| coexpression network | CFinderM001002 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, cytokinesis microtubule cytoskeleton organization, 3-dehydroquinate synthase activity, |
| coexpression network | CFinderM001003 | Endocytosis STE_STE11 (from iTAK) |
| coexpression network | CFinderM001059 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, SNARE_interactions_in_vesicular_transport Golgi vesicle transport, aromatic amino acid family biosynthetic process, phosphatidylinositol metabolic process, RNA_degradation |
| coexpression network | CFinderM001205 | ribonucleoside_binding transcription, DNA-dependent, DNA-directed RNA polymerase activity, Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Glutathione_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04782.11 | DUF632 | 113 | 417 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.