|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis | 0.000437541 | KEGG | | 3-dehydroquinate synthase activity, | 0.004812049 | GO:0003856 | | regulation_of_cell_cycle | 0.0144091 | GO:0051726 | | aromatic amino acid family biosynthetic process, | 0.0144091 | GO:0009073 | | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity | 0.015986115 | GO:0000079 | | protein_kinase_binding | 0.023979172 | GO:0019901 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000106G1400 | DHHC-type zinc finger family protein | AT1G69420 (2.30E-64) | | PH01000158G1460 | GRAM domain family protein | AT2G22475 (2.70E-61) | | PH01000334G0560 | Protein of unknown function (DUF630 and DUF632) | AT5G25590 (2.00E-158) | | PH01000551G0210 | RING/FYVE/PHD zinc finger superfamily protein | AT1G43770 (2.60E-25) | | PH01001226G0560 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | AT1G65920 (3.00E-166) | | PH01006031G0060 | 3-dehydroquinate synthase, putative | AT5G66120 (1.00E-170) | | PH01010875G0010 | Cyclin A1;1 | AT1G44110 (4.10E-95) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000363 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
| details | | CFinderM000536 | SET Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
| details | | CFinderM000573 | fatty-acyl-CoA binding,
Others Transcription_Regulator(from iTAK)
signal transduction,
| details | | CFinderM000638 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
B3 Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
| details | | CFinderM000788 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
cytoplasm,
protein complex,
aromatic amino acid family biosynthetic process,
response to hormone stimulus,
protein polymerization,
Plant_hormone_signal_transduction
| details | | CFinderM000939 | microtubule-based movement,
microtubule associated complex,
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
microtubule motor activity,
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
minus-end-directed_microtubule_motor_activity
RNA_degradation
| details | | CFinderM000998 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lysine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
histone_methylation
histone_lysine_methylation
aromatic amino acid family biosynthetic process,
SET Transcription_Regulator(from iTAK)
| details | | CFinderM001002 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
cytokinesis
microtubule cytoskeleton organization,
3-dehydroquinate synthase activity,
| details | | CFinderM001003 | Endocytosis
STE_STE11 (from iTAK)
| details | | CFinderM001059 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
aromatic amino acid family biosynthetic process,
phosphatidylinositol metabolic process,
RNA_degradation
| details | | CFinderM001179 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
| details | | CFinderM001205 | ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
| details | | CFinderM001399 | RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
| details | | CFinderM001400 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
ribonuclease H activity,
DNA photolyase activity,
cytokinesis
aromatic amino acid family biosynthetic process,
microtubule cytoskeleton organization,
RNA metabolic process,
DNA_replication
microtubule binding,
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
protein ubiquitination,
DNA repair,
| details | | CFinderM001592 | DNA_ligation_involved_in_DNA_repair
DNA_ligase_activity
DNA ligase (ATP) activity,
regulation_of_cell_cycle
DNA recombination,
C3H Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
HB-BELL Transcription_Regulator(from iTAK)
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
Mismatch_repair
Base_excision_repair
Nucleotide_excision_repair
DNA_replication
DNA binding,
| details | | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,
| details |
4.Expression profilings |
