PH01000106G1400's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT1G69420 : 2.30E-64
Blast annotation: DHHC-type zinc finger family protein
2.Location
Scaffold: PH01000106
Strand: +
| Region | Start | End |
| gene | 997012 | 1001583 |
| mRNA | 997012 | 1001583 |
| exon | 997012 | 997467 |
| exon | 998137 | 998328 |
| exon | 998701 | 998892 |
| exon | 999420 | 1001583 |
| CDS | 997384 | 997467 |
| CDS | 998137 | 998328 |
| CDS | 998701 | 998892 |
| CDS | 999420 | 1000175 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000527 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, regulation_of_cell_cycle aromatic amino acid family biosynthetic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding |
| coexpression network | CFinderM000788 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, B3-ARF Transcription_Regulator(from iTAK) ARF Transcription_Regulator(from PlantTFDB) cytoplasm, protein complex, aromatic amino acid family biosynthetic process, response to hormone stimulus, protein polymerization, Plant_hormone_signal_transduction |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.