PH01006031G0060's details annotation
1.Annotation
ICBR annotation: 3-dehydroquinate synthase, putative, expressed
Blast result AT5G66120 : 1.00E-170
Blast annotation: 3-dehydroquinate synthase, putative
2.Location
Scaffold: PH01006031
Strand: -
| Region | Start | End |
| gene | 34863 | 39498 |
| mRNA | 34863 | 39498 |
| exon | 34863 | 35894 |
| exon | 36104 | 36247 |
| exon | 36343 | 36405 |
| exon | 37192 | 37315 |
| exon | 38105 | 38331 |
| exon | 38418 | 38585 |
| exon | 38658 | 38808 |
| exon | 38892 | 39498 |
| CDS | 35763 | 35894 |
| CDS | 36104 | 36247 |
| CDS | 36343 | 36405 |
| CDS | 37192 | 37315 |
| CDS | 38105 | 38331 |
| CDS | 38418 | 38585 |
| CDS | 38658 | 38808 |
| CDS | 38892 | 39202 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000363 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, 3-dehydroquinate synthase activity, ribonucleoside_binding transcription, DNA-dependent, DNA-directed RNA polymerase activity, |
| coexpression network | CFinderM000527 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, regulation_of_cell_cycle aromatic amino acid family biosynthetic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding |
| coexpression network | CFinderM000638 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, 3-dehydroquinate synthase activity, B3 Transcription_Regulator(from PlantTFDB) SNF2 Transcription_Regulator(from iTAK) Others Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000788 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, B3-ARF Transcription_Regulator(from iTAK) ARF Transcription_Regulator(from PlantTFDB) cytoplasm, protein complex, aromatic amino acid family biosynthetic process, response to hormone stimulus, protein polymerization, Plant_hormone_signal_transduction |
| coexpression network | CFinderM000939 | microtubule-based movement, microtubule associated complex, Phenylalanine,_tyrosine_and_tryptophan_biosynthesis microtubule motor activity, aromatic amino acid family biosynthetic process, 3-dehydroquinate synthase activity, minus-end-directed_microtubule_motor_activity RNA_degradation |
| coexpression network | CFinderM000998 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Lysine_degradation HB-other Transcription_Regulator(from PlantTFDB) histone_methylation histone_lysine_methylation aromatic amino acid family biosynthetic process, SET Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001002 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, cytokinesis microtubule cytoskeleton organization, 3-dehydroquinate synthase activity, |
| coexpression network | CFinderM001059 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, SNARE_interactions_in_vesicular_transport Golgi vesicle transport, aromatic amino acid family biosynthetic process, phosphatidylinositol metabolic process, RNA_degradation |
| coexpression network | CFinderM001179 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, |
| coexpression network | CFinderM001399 | RNA_transport Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, Base_excision_repair |
| coexpression network | CFinderM001400 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, ribonuclease H activity, DNA photolyase activity, cytokinesis aromatic amino acid family biosynthetic process, microtubule cytoskeleton organization, RNA metabolic process, DNA_replication microtubule binding, ubiquitin ligase complex, Ubiquitin_mediated_proteolysis protein ubiquitination, DNA repair, |
| coexpression network | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Lipoic_acid_metabolism HB-BELL Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) aromatic amino acid family biosynthetic process, lipoate biosynthetic process, lipoate synthase activity, 3-dehydroquinate synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01761.19 | DHQ_synthase | 143 | 401 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 406 Phenylalanine, tyrosine and tryptophan biosynthesis | 3-dehydroquinate synthase [EC:4.2.3.4] | K01735 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003856 | 3-dehydroquinate synthase activity |
| GO:0005737 | cytoplasm |
| GO:0009073 | aromatic amino acid family biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.