Annotation of co-expression genes

PH01006766G0010's details annotation

1.Annotation

ICBR annotation: syntaxin 6, putative, expressed

Blast result AT1G28490 : 9.10E-61
Blast annotation: syntaxin of plants 61

2.Location

Scaffold: PH01006766
Strand: +

RegionStartEnd
gene48938305
mRNA48938305
exon48935396
exon58976010
exon62706383
exon66346836
exon75127602
exon78257890
exon81338305
CDS53915396
CDS58976010
CDS62706383
CDS66346836
CDS75127602
CDS78257890
CDS81338243

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001059Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
aromatic amino acid family biosynthetic process,
phosphatidylinositol metabolic process,
RNA_degradation
coexpression networkCFinderM001299SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
bZIP Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF09177.10Syntaxin-6_N379
PF05739.18SNARE179230

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
SNARE interactions in vesicular transportsyntaxin of plants SYP6ko04130K08500

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0016020membrane
GO:0016192vesicle-mediated transport
GO:0048193Golgi vesicle transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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