PH01001083G0430's details annotation
1.Annotation
ICBR annotation: FHA domain containing protein, putative, expressed
Blast result AT1G34355 : 1.90E-33
Blast annotation: forkhead-associated (FHA) domain-containing protein
2.Location
Scaffold: PH01001083
Strand: -
| Region | Start | End |
| gene | 299860 | 302679 |
| mRNA | 299860 | 302679 |
| exon | 299860 | 300325 |
| exon | 300427 | 300812 |
| exon | 301889 | 302679 |
| CDS | 300038 | 300325 |
| CDS | 300427 | 300812 |
| CDS | 301889 | 302372 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000788 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, B3-ARF Transcription_Regulator(from iTAK) ARF Transcription_Regulator(from PlantTFDB) cytoplasm, protein complex, aromatic amino acid family biosynthetic process, response to hormone stimulus, protein polymerization, Plant_hormone_signal_transduction |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13638.5 | PIN_4 | 160 | 296 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.