PH01000154G1170's details annotation
1.Annotation
ICBR annotation: src homology-3 domain protein 3, putative, expressed
Blast result AT1G31440 : 1.50E-92
Blast annotation: SH3 domain-containing protein
2.Location
Scaffold: PH01000154
Strand: +
| Region | Start | End |
| gene | 740660 | 746615 |
| mRNA | 740660 | 746615 |
| exon | 740660 | 741331 |
| exon | 741778 | 741894 |
| exon | 741985 | 742054 |
| exon | 742146 | 742294 |
| exon | 742746 | 742847 |
| exon | 742922 | 743122 |
| exon | 744081 | 744143 |
| exon | 744277 | 744471 |
| exon | 745237 | 745311 |
| exon | 745573 | 746615 |
| CDS | 741272 | 741331 |
| CDS | 741778 | 741894 |
| CDS | 741985 | 742054 |
| CDS | 742146 | 742294 |
| CDS | 742746 | 742847 |
| CDS | 742922 | 743122 |
| CDS | 744081 | 744143 |
| CDS | 744277 | 744471 |
| CDS | 745237 | 745311 |
| CDS | 745573 | 745701 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000721 | phospholipid transport, phospholipid-translocating ATPase activity, Glycine,_serine_and_threonine_metabolism cation transport, cation-transporting_ATPase_activity magnesium ion binding, phosphoserine phosphatase activity, CAMK_CDPK (from iTAK) integral to membrane, L-serine biosynthetic process, metal ion binding, Methane_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14604.5 | SH3_9 | 320 | 368 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.