PH01000154G1380's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G59020 : 7.80E-37
Blast annotation: Protein of unknown function (DUF3527)
2.Location
Scaffold: PH01000154
Strand: -
| Region | Start | End |
| gene | 844108 | 849026 |
| mRNA | 844108 | 849026 |
| exon | 844108 | 846888 |
| exon | 847332 | 849026 |
| CDS | 844290 | 846888 |
| CDS | 847332 | 847471 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000473 | |
| coexpression network | CFinderM000646 | ion transport, Ubiquitin_mediated_proteolysis membrane, |
| coexpression network | CFinderM001120 | Valine,_leucine_and_isoleucine_biosynthesis Glycine,_serine_and_threonine_metabolism isoleucine biosynthetic process, L-threonine ammonia-lyase activity, cellular amino acid metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12043.7 | DUF3527 | 590 | 744 |
| PF12043.7 | DUF3527 | 761 | 829 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.