PH01000154G1480's details annotation
1.Annotation
ICBR annotation: LIM domain-containing protein, putative, expressed
Blast result AT2G39830 : 2.00E-144
Blast annotation: DA1-related protein 2
2.Location
Scaffold: PH01000154
Strand: -
| Region | Start | End |
| gene | 916418 | 920922 |
| mRNA | 916418 | 920922 |
| exon | 916418 | 917358 |
| exon | 917463 | 917521 |
| exon | 917639 | 917754 |
| exon | 918890 | 918952 |
| exon | 919033 | 919245 |
| exon | 919570 | 919689 |
| exon | 919985 | 920138 |
| exon | 920185 | 920311 |
| exon | 920399 | 920922 |
| CDS | 917021 | 917358 |
| CDS | 917463 | 917521 |
| CDS | 917639 | 917754 |
| CDS | 918890 | 918952 |
| CDS | 919033 | 919245 |
| CDS | 919570 | 919689 |
| CDS | 919985 | 920138 |
| CDS | 920185 | 920311 |
| CDS | 920399 | 920450 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000963 | RLK-Pelle_LRR-XI-1 (from iTAK) Others Transcription_Regulator(from iTAK) zinc ion binding, |
| coexpression network | CFinderM001254 | GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) Others Transcription_Regulator(from iTAK) bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001536 | carbohydrate phosphorylation, galactose metabolic process, CAMK_CDPK (from iTAK) Others Transcription_Regulator(from iTAK) galactokinase activity, Galactose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00412.21 | LIM | 73 | 114 |
| PF12315.7 | DA1-like | 194 | 408 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.