PH01000155G0900's details annotation
1.Annotation
ICBR annotation: chorismate mutase, chloroplast precursor, putative, expressed
Blast result AT1G69370 : 9.90E-98
Blast annotation: chorismate mutase 3
2.Location
Scaffold: PH01000155
Strand: -
| Region | Start | End |
| gene | 594815 | 599061 |
| mRNA | 594815 | 599061 |
| exon | 594815 | 595102 |
| exon | 595256 | 595348 |
| exon | 595659 | 595802 |
| exon | 597604 | 597690 |
| exon | 597770 | 597989 |
| exon | 598815 | 599061 |
| CDS | 594866 | 595102 |
| CDS | 595256 | 595348 |
| CDS | 595659 | 595802 |
| CDS | 597604 | 597690 |
| CDS | 597770 | 597989 |
| CDS | 598815 | 598984 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000804 | cysteine synthase activity, chorismate mutase activity, Phenylalanine,_tyrosine_and_tryptophan_biosynthesis SET Transcription_Regulator(from iTAK) cysteine biosynthetic process from serine, aromatic amino acid family biosynthetic process, chorismate metabolic process, SNARE_interactions_in_vesicular_transport Sulfur_metabolism Cysteine_and_methionine_metabolism |
| coexpression network | CFinderM000899 | glucose-6-phosphate dehydrogenase activity, glucose metabolic process, galactosyltransferase activity, NADP binding, Glutathione_metabolism Pentose_phosphate_pathway Glycine,_serine_and_threonine_metabolism Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin protein glycosylation, phosphoserine phosphatase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, chorismate mutase activity, chorismate metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 431 Phenylalanine, tyrosine and tryptophan biosynthesis | chorismate mutase [EC:5.4.99.5] | K01850 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004106 | chorismate mutase activity |
| GO:0009073 | aromatic amino acid family biosynthetic process |
| GO:0046417 | chorismate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.