PH01000158G1240's details annotation
1.Annotation
ICBR annotation: CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Blast result AT3G50530 : 0.00E+00
Blast annotation: CDPK-related kinase
2.Location
Scaffold: PH01000158
Strand: -
| Region | Start | End |
| gene | 829343 | 834236 |
| mRNA | 829343 | 834236 |
| exon | 829343 | 829558 |
| exon | 829652 | 829819 |
| exon | 829902 | 829964 |
| exon | 830047 | 830154 |
| exon | 830640 | 830752 |
| exon | 830833 | 831129 |
| exon | 831262 | 831340 |
| exon | 831649 | 831757 |
| exon | 831862 | 831903 |
| exon | 832537 | 832667 |
| exon | 833415 | 834236 |
| CDS | 829418 | 829558 |
| CDS | 829652 | 829819 |
| CDS | 829902 | 829964 |
| CDS | 830047 | 830154 |
| CDS | 830640 | 830752 |
| CDS | 830833 | 831129 |
| CDS | 831262 | 831340 |
| CDS | 831649 | 831757 |
| CDS | 831862 | 831903 |
| CDS | 832537 | 832667 |
| CDS | 833415 | 833525 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000504 | cytoplasm, microtubule associated complex, Pyruvate_metabolism Fatty_acid_biosynthesis Glycine,_serine_and_threonine_metabolism Valine,_leucine_and_isoleucine_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 3 | 261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005509 | calcium ion binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.