PH01000159G0310's details annotation
1.Annotation
ICBR annotation: 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed
Blast result AT3G14270 : 0
Blast annotation: phosphatidylinositol-4-phosphate 5-kinase family protein
2.Location
Scaffold: PH01000159
Strand: +
| Region | Start | End |
| gene | 265010 | 270049 |
| mRNA | 265010 | 270049 |
| exon | 265010 | 265899 |
| exon | 266135 | 266872 |
| exon | 267127 | 267280 |
| exon | 267361 | 267705 |
| exon | 268194 | 269115 |
| exon | 269660 | 270049 |
| CDS | 265298 | 265899 |
| CDS | 266135 | 266872 |
| CDS | 267127 | 267280 |
| CDS | 267361 | 267705 |
| CDS | 268194 | 269115 |
| CDS | 269660 | 270015 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000862 | DBP Transcription_Regulator(from iTAK) Golgi stack, GPI-anchor transamidase complex, |
| coexpression network | CFinderM000878 | Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system Phagosome |
| coexpression network | CFinderM001170 | DBP Transcription_Regulator(from iTAK) cellular protein metabolic process, protein dephosphorylation, Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism Phagosome |
| coexpression network | CFinderM001335 | clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit, Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system WRKY Transcription_Regulator(from PlantTFDB) Phagosome |
| coexpression network | CFinderM001725 | cellular protein metabolic process, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01363.20 | FYVE | 33 | 100 |
| PF00118.23 | Cpn60_TCP1 | 387 | 653 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Inositol phosphate metabolism | 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.15] | ko00562 | K00921 |
| Phosphatidylinositol signaling system | 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.15] | ko04070 | K00921 |
| Phagosome | 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.15] | ko04145 | K00921 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0044267 | cellular protein metabolic process |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.