Annotation of co-expression genes

PH01000168G0530's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT3G07810 : 2.00E-115
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01000168
Strand: -

RegionStartEnd
gene480965486002
mRNA480965486002
exon480965481179
exon481499482690
exon482770483002
exon484306486002
CDS481160481179
CDS481499482690
CDS482770483002
CDS484306484516

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001583endoplasmic reticulum,
bZIP Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001584
coexpression networkCFinderM001629mRNA_surveillance_pathway
peptide-methionine-(S)-S-oxide reductase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_182147
PF00076.21RRM_1182248

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
mRNA surveillance pathwayRNA-binding protein Musashiko03015K14411

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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