PH01000169G1160's details annotation
1.Annotation
ICBR annotation: zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Blast result AT1G21580 : 1.00E-106
Blast annotation: Zinc finger C-x8-C-x5-C-x3-H type family protein
2.Location
Scaffold: PH01000169
Strand: +
| Region | Start | End |
| gene | 767226 | 777518 |
| mRNA | 767226 | 777518 |
| exon | 767226 | 773048 |
| exon | 773859 | 774060 |
| exon | 774205 | 774349 |
| exon | 774761 | 774845 |
| exon | 775299 | 775368 |
| exon | 775473 | 775743 |
| exon | 775819 | 775861 |
| exon | 775952 | 776055 |
| exon | 776670 | 777518 |
| CDS | 768929 | 773048 |
| CDS | 773859 | 774060 |
| CDS | 774205 | 774349 |
| CDS | 774761 | 774845 |
| CDS | 775299 | 775368 |
| CDS | 775473 | 775743 |
| CDS | 775819 | 775861 |
| CDS | 775952 | 776055 |
| CDS | 776670 | 777113 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001199 | proton-transporting two-sector ATPase complex, catalytic domain, proton-transporting ATP synthase complex, catalytic core F(1), CMGC_CDK-PITSLRE (from iTAK) HB-other Transcription_Regulator(from PlantTFDB) C3H Transcription_Regulator(from PlantTFDB) tricarboxylic acid cycle, ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, Pyruvate_metabolism Carbon_fixation_pathways_in_prokaryotes Methane_metabolism Carbon_fixation_in_photosynthetic_organisms |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C3H |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.