Annotation of co-expression genes

PH01000171G0080's details annotation

1.Annotation

ICBR annotation: dynamin family protein, putative, expressed

Blast result AT3G60190 : 0.00E+00
Blast annotation: DYNAMIN-like 1E

2.Location

Scaffold: PH01000171
Strand: +

RegionStartEnd
gene5190160093
mRNA5190160093
exon5190152659
exon5274752810
exon5290353016
exon5358153682
exon5414354204
exon5533755427
exon5635856422
exon5651056758
exon5679156910
exon5698257052
exon5714957374
exon5744957499
exon5758757961
exon5970760093
CDS5251352659
CDS5274752810
CDS5290353016
CDS5358153682
CDS5414354204
CDS5533755427
CDS5635856422
CDS5651056758
CDS5679156910
CDS5698257052
CDS5714957374
CDS5744957499
CDS5758757961
CDS5970760009

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001229Phenylalanine,_tyrosine_and_tryptophan_biosynthesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00350.22Dynamin_N43203
PF01031.19Dynamin_M213284
PF01031.19Dynamin_M299498
PF02212.17GED525586

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005525GTP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.