Annotation of co-expression genes

PH01000172G0030's details annotation

1.Annotation

ICBR annotation: glutathione S-transferase, putative, expressed

Blast result AT2G02390 : 3.30E-61
Blast annotation: glutathione S-transferase zeta 1

2.Location

Scaffold: PH01000172
Strand: -

RegionStartEnd
gene1401119163
mRNA1401119163
exon1401116750
exon1740117472
exon1756217647
exon1839018512
exon1868819163
CDS1668816750
CDS1740117472
CDS1756217647
CDS1839018512
CDS1868818769

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000319nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
coexpression networkCFinderM000824cytoplasm,
aromatic amino acid family metabolic process,
carbohydrate phosphorylation,
galactose metabolic process,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
galactokinase activity,
iron ion binding,
heme binding,
electron carrier activity,
kinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13417.5GST_N_3879
PF00043.24GST_C124195

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005515protein binding
GO:0005737cytoplasm
GO:0009072aromatic amino acid family metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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