PH01000183G0200's details annotation
1.Annotation
ICBR annotation: OsDegp15 - Putative Deg protease homologue, expressed
Blast result AT4G18370 : 9.90E-69
Blast annotation: DEGP protease 5
2.Location
Scaffold: PH01000183
Strand: -
| Region | Start | End |
| gene | 169128 | 176000 |
| mRNA | 169128 | 176000 |
| exon | 169128 | 169633 |
| exon | 170525 | 170599 |
| exon | 173249 | 173315 |
| exon | 173718 | 173840 |
| exon | 173929 | 174018 |
| exon | 174139 | 174201 |
| exon | 174969 | 175185 |
| exon | 175225 | 176000 |
| CDS | 169527 | 169633 |
| CDS | 170525 | 170599 |
| CDS | 173249 | 173315 |
| CDS | 173718 | 173840 |
| CDS | 173929 | 174018 |
| CDS | 174139 | 174201 |
| CDS | 174969 | 175185 |
| CDS | 175225 | 175430 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000535 | GT37 GlycosylTransferases CMGC_MAPK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13365.5 | Trypsin_2 | 130 | 272 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.