Annotation of co-expression genes

PH01000183G0310's details annotation

1.Annotation

ICBR annotation: kinesin motor domain containing protein, putative, expressed

Blast result AT1G72250 : 0.00E+00
Blast annotation: Di-glucose binding protein with Kinesin motor domain

2.Location

Scaffold: PH01000183
Strand: +

RegionStartEnd
gene244464251050
mRNA244464251050
exon244464245729
exon245810245917
exon246053246384
exon246461246656
exon246812246888
exon247009247108
exon247216247323
exon247412247585
exon247670247955
exon248030248191
exon248292248507
exon248696248867
exon248955249080
exon249236251050
CDS245678245729
CDS245810245917
CDS246053246384
CDS246461246656
CDS246812246888
CDS247009247108
CDS247216247323
CDS247412247585
CDS247670247955
CDS248030248191
CDS248292248507
CDS248696248867
CDS248955249080
CDS249236250006

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000939microtubule-based movement,
microtubule associated complex,
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
microtubule motor activity,
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
minus-end-directed_microtubule_motor_activity
RNA_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00225.22Kinesin332641

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003777microtubule motor activity
GO:0005524ATP binding
GO:0005875microtubule associated complex
GO:0007018microtubule-based movement
GO:0008569minus-end-directed microtubule motor activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.