PH01000185G0390's details annotation
1.Annotation
ICBR annotation: glycosyl transferase, group 1 domain containing protein, expressed
Blast result AT2G40190 : 2.00E-177
Blast annotation: UDP-Glycosyltransferase superfamily protein
2.Location
Scaffold: PH01000185
Strand: +
| Region | Start | End |
| gene | 304923 | 310456 |
| mRNA | 304923 | 310456 |
| exon | 304923 | 305718 |
| exon | 306794 | 307080 |
| exon | 307932 | 308118 |
| exon | 308322 | 308390 |
| exon | 308487 | 308680 |
| exon | 308764 | 308873 |
| exon | 309278 | 309489 |
| exon | 309629 | 310456 |
| CDS | 305446 | 305718 |
| CDS | 306794 | 307080 |
| CDS | 307932 | 308118 |
| CDS | 308322 | 308390 |
| CDS | 308487 | 308680 |
| CDS | 308764 | 308873 |
| CDS | 309278 | 309489 |
| CDS | 309629 | 309730 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000154 | GT37 GlycosylTransferases cell wall biogenesis, cell death, protein catabolic process, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis galactoside 2-alpha-L-fucosyltransferase activity, integral to membrane, membrane, mRNA_surveillance_pathway |
| coexpression network | CFinderM000535 | GT37 GlycosylTransferases CMGC_MAPK (from iTAK) |
| coexpression network | CFinderM001442 | GT37 GlycosylTransferases RLK-Pelle_LRR-Xa (from iTAK) cell wall biogenesis, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis galactoside 2-alpha-L-fucosyltransferase activity, |
| coexpression network | CFinderM001690 | GT37 GlycosylTransferases cell wall biogenesis, proteolysis, protein catabolic process, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis galactoside 2-alpha-L-fucosyltransferase activity, mRNA_surveillance_pathway |
| coexpression network | CFinderM001738 | GT37 GlycosylTransferases galactoside 2-alpha-L-fucosyltransferase activity, cell wall biogenesis, cell death, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis membrane coat, mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15924.4 | ALG11_N | 32 | 230 |
| PF00534.19 | Glycos_transf_1 | 258 | 423 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| N-Glycan biosynthesis | alpha-1,2-mannosyltransferase [EC:2.4.1.131] | ko00510 | K03844 |
| Various types of N-glycan biosynthesis | alpha-1,2-mannosyltransferase [EC:2.4.1.131] | ko00513 | K03844 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009058 | biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.