PH01000192G1350's details annotation
1.Annotation
ICBR annotation: CRS1/YhbY domain containing protein, putative, expressed
Blast result AT3G25440 : 7.60E-97
Blast annotation: RNA-binding CRS1 / YhbY (CRM) domain protein
2.Location
Scaffold: PH01000192
Strand: +
| Region | Start | End |
| gene | 911428 | 916577 |
| mRNA | 911428 | 916577 |
| exon | 911428 | 913180 |
| exon | 913582 | 913891 |
| exon | 914303 | 914764 |
| exon | 915179 | 916577 |
| CDS | 913026 | 913180 |
| CDS | 913582 | 913891 |
| CDS | 914303 | 914764 |
| CDS | 915179 | 915760 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000905 | Sulfur_relay_system |
| coexpression network | CFinderM001871 | Steroid_biosynthesis steroid biosynthetic process, sterol_24-C-methyltransferase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01985.20 | CRS1_YhbY | 204 | 287 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.