Annotation of co-expression genes

PH01000197G0160's details annotation

1.Annotation

ICBR annotation: AAA-type ATPase family protein, putative, expressed

Blast result AT2G18330 : 0.00E+00
Blast annotation: AAA-type ATPase family protein

2.Location

Scaffold: PH01000197
Strand: -

RegionStartEnd
gene103694109706
mRNA103694109706
exon103694105146
exon105475105623
exon106083106392
exon106496106586
exon107417107726
exon107859107982
exon108168108284
exon108619108781
exon109618109706
CDS104642105146
CDS105475105623
CDS106083106392
CDS106496106586
CDS107417107726
CDS107859107982
CDS108168108284
CDS108619108781
CDS109618109624

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001187glycogen biosynthetic process,
'de novo' IMP biosynthetic process,
5-(carboxyamino)imidazole_ribonucleotide_mutase_activity

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12037.7DUF35232456
PF12037.7DUF3523101292
PF00004.28AAA353480

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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