PH01000201G0710's details annotation
1.Annotation
ICBR annotation: calmodulin-binding transcription activator, putative, expressed
Blast result AT2G22300 : 0.00E+00
Blast annotation: signal responsive 1
2.Location
Scaffold: PH01000201
Strand: -
| Region | Start | End |
| gene | 526501 | 540504 |
| mRNA | 526501 | 540504 |
| exon | 526501 | 527268 |
| exon | 527412 | 527756 |
| exon | 528107 | 528650 |
| exon | 528744 | 529438 |
| exon | 529561 | 529935 |
| exon | 530499 | 530824 |
| exon | 530909 | 531088 |
| exon | 531155 | 531302 |
| exon | 532308 | 532350 |
| exon | 532527 | 532615 |
| exon | 532703 | 532818 |
| exon | 533340 | 533459 |
| exon | 534408 | 534507 |
| exon | 538028 | 538222 |
| exon | 538361 | 538380 |
| exon | 539173 | 540504 |
| CDS | 527158 | 527268 |
| CDS | 527412 | 527756 |
| CDS | 528107 | 528650 |
| CDS | 528744 | 529438 |
| CDS | 529561 | 529935 |
| CDS | 530499 | 530824 |
| CDS | 530909 | 531088 |
| CDS | 531155 | 531302 |
| CDS | 532308 | 532350 |
| CDS | 532527 | 532615 |
| CDS | 532703 | 532818 |
| CDS | 533340 | 533459 |
| CDS | 534408 | 534507 |
| CDS | 538028 | 538222 |
| CDS | 538361 | 538380 |
| CDS | 539173 | 539557 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000810 | CAMTA Transcription_Regulator(from PlantTFDB) glycerol-3-phosphate dehydrogenase complex, Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM001611 | CAMTA Transcription_Regulator(from PlantTFDB) ABC_transporters Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | CAMTA |
| Transcription_Regulator(from PlantTFDB) | CAMTA |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03859.15 | CG-1 | 241 | 354 |
| PF01833.23 | TIG | 684 | 762 |
| PF00612.26 | IQ | 1082 | 1101 |
| PF00612.26 | IQ | 1106 | 1125 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.