PH01000203G0690's details annotation
1.Annotation
ICBR annotation: zinc finger CCCH-type with G patch domain-containing protein, putative, expressed
Blast result AT2G24830 : 4.00E-119
Blast annotation: zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein
2.Location
Scaffold: PH01000203
Strand: -
| Region | Start | End |
| gene | 567251 | 571458 |
| mRNA | 567251 | 571458 |
| exon | 567251 | 568762 |
| exon | 569057 | 569117 |
| exon | 569915 | 570232 |
| exon | 571042 | 571458 |
| CDS | 567762 | 568762 |
| CDS | 569057 | 569117 |
| CDS | 569915 | 570232 |
| CDS | 571042 | 571176 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001391 | Lysine_biosynthesis L,L-diaminopimelate_aminotransferase_activity C3H Transcription_Regulator(from PlantTFDB) lysine biosynthetic process via diaminopimelate, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C3H |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01585.22 | G-patch | 305 | 347 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.