Annotation of co-expression genes

PH01000203G0890's details annotation

1.Annotation

ICBR annotation: ThiF family domain containing protein, putative, expressed

Blast result AT5G37530 : 6.00E-164
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein

2.Location

Scaffold: PH01000203
Strand: +

RegionStartEnd
gene740199746413
mRNA740199746413
exon740199740515
exon740608740666
exon740724740829
exon741732741879
exon742472742684
exon743204743338
exon743491743622
exon743798744013
exon744214744338
exon745098745155
exon745282746413
CDS740421740515
CDS740608740666
CDS740724740829
CDS741732741879
CDS742472742684
CDS743204743338
CDS743491743622
CDS743798744013
CDS744214744338
CDS745098745155
CDS745282745410

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001069RNA modification,
pseudouridine synthesis,
nucleosome assembly,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00899.20ThiF88344

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.