CFinderM001069's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
RNA modification,0.012869287GO:0009451
pseudouridine synthesis,0.012869287GO:0001522
nucleosome assembly,0.026657507GO:0006334

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000203G0890NAD(P)-binding Rossmann-fold superfamily proteinAT5G37530 (6.00E-164)
PH01000234G0510NAP1-related protein 2AT1G18800 (1.90E-74)
PH01001441G0500-- (-)
PH01001463G0050P-loop containing nucleoside triphosphate hydrolases superfamily proteinAT4G34910 (4.00E-123)
PH01001947G0410Pseudouridine synthase family proteinAT3G04820 (4.00E-129)
PH01002172G0180Transducin/WD40 repeat-like superfamily proteinAT1G03110 (1.50E-51)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000433Ribosome_biogenesis_in_eukaryotes
ATP-dependent helicase activity,
threonine-tRNA ligase activity,
helicase activity,
details
CFinderM000852ATP-dependent helicase activity,
helicase activity,
membrane coat,
Ribosome_biogenesis_in_eukaryotes
details
CFinderM001364DNA replication factor C complex,
pyrimidine nucleotide biosynthetic process,
DNA clamp loader activity,
DNA_replication
CTP synthase activity,
Nucleotide_excision_repair
Mismatch_repair
DNA_replication
Base_excision_repair
details

4.Expression profilings

Created with Highcharts 4.1.6Gene expression profiling among different tissue samples012345leaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR105071PH01000203G0890PH01000234G0510PH01001441G0500PH01001463G0050PH01001947G0410PH01002172G0180Highcharts.com