Gene details

Annotation of co-expression genes

PH01001947G0410's details annotation

1.Annotation

ICBR annotation: pseudouridylate synthase, putative, expressed

Blast result AT3G04820 : 4.00E-129
Blast annotation: Pseudouridine synthase family protein

2.Location

Scaffold: PH01001947
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001069	RNA modification, pseudouridine synthesis, nucleosome assembly,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF01142.17	TruD	204	267

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0001522	pseudouridine synthesis
GO:0003723	RNA binding
GO:0009451	RNA modification
GO:0009982	pseudouridine synthase activity

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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