Gene details

Annotation of co-expression genes

PH01001463G0050's details annotation

1.Annotation

ICBR annotation: DEAD-box ATP-dependent RNA helicase, putative, expressed

Blast result AT4G34910 : 4.00E-123
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.Location

Scaffold: PH01001463
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000433	Ribosome_biogenesis_in_eukaryotes ATP-dependent helicase activity, threonine-tRNA ligase activity, helicase activity,
coexpression network	CFinderM000852	ATP-dependent helicase activity, helicase activity, membrane coat, Ribosome_biogenesis_in_eukaryotes
coexpression network	CFinderM001069	RNA modification, pseudouridine synthesis, nucleosome assembly,
coexpression network	CFinderM001364	DNA replication factor C complex, pyrimidine nucleotide biosynthetic process, DNA clamp loader activity, DNA_replication CTP synthase activity, Nucleotide_excision_repair Mismatch_repair DNA_replication Base_excision_repair

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0003676	nucleic acid binding
GO:0004386	helicase activity
GO:0005524	ATP binding
GO:0008026	ATP-dependent helicase activity

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.