Annotation of co-expression genes

PH01000204G0450's details annotation

1.Annotation

ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed

Blast result AT2G26060 : 2.00E-125
Blast annotation: Transducin/WD40 repeat-like superfamily protein

2.Location

Scaffold: PH01000204
Strand: -

RegionStartEnd
gene360626368201
mRNA360626368201
exon360626361378
exon362222362282
exon362445362528
exon363045363114
exon363704363766
exon364507364625
exon364756364810
exon365478365542
exon365737365955
exon366056366202
exon366306368201
CDS361263361378
CDS362222362282
CDS362445362528
CDS363045363114
CDS363704363766
CDS364507364625
CDS364756364810
CDS365478365542
CDS365737365955
CDS366056366202
CDS366306366491

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000681protein arginylation,
GH47 Glycoside_Hydrolases
arginyltransferase activity,
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
coexpression networkCFinderM000937

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00400.31WD401152
PF00400.31WD406397
PF00400.31WD40105141
PF00400.31WD40150186
PF00400.31WD40195247
PF00400.31WD40322353

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.