PH01000206G1130's details annotation
1.Annotation
ICBR annotation: outer membrane protein, OMP85 family protein, expressed
Blast result AT5G05520 : 5.40E-60
Blast annotation: Outer membrane OMP85 family protein
2.Location
Scaffold: PH01000206
Strand: +
| Region | Start | End |
| gene | 737023 | 744237 |
| mRNA | 737023 | 744237 |
| exon | 737023 | 737649 |
| exon | 742275 | 742379 |
| exon | 742670 | 743200 |
| exon | 743297 | 744237 |
| CDS | 737143 | 737649 |
| CDS | 742275 | 742379 |
| CDS | 742670 | 743200 |
| CDS | 743297 | 743380 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000754 | Ribosome outer membrane, proteasome core complex, alpha-subunit complex, structural constituent of ribosome, threonine-type endopeptidase activity, endopeptidase activity, translation, intracellular, proteasome core complex, Proteasome proteolysis involved in cellular protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01103.22 | Bac_surface_Ag | 227 | 405 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0019867 | outer membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.