PH01000209G0080's details annotation
1.Annotation
ICBR annotation: actin, putative, expressed
Blast result AT3G33520 : 1.00E-129
Blast annotation: actin-related protein 6
2.Location
Scaffold: PH01000209
Strand: -
| Region | Start | End |
| gene | 45155 | 51672 |
| mRNA | 45155 | 51672 |
| exon | 45155 | 45352 |
| exon | 45582 | 45644 |
| exon | 45727 | 45777 |
| exon | 45858 | 45942 |
| exon | 46886 | 46949 |
| exon | 47020 | 47218 |
| exon | 49111 | 51672 |
| CDS | 45274 | 45352 |
| CDS | 45582 | 45644 |
| CDS | 45727 | 45777 |
| CDS | 45858 | 45942 |
| CDS | 46886 | 46949 |
| CDS | 47020 | 47218 |
| CDS | 49111 | 49817 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001187 | glycogen biosynthetic process, 'de novo' IMP biosynthetic process, 5-(carboxyamino)imidazole_ribonucleotide_mutase_activity |
| coexpression network | CFinderM001556 | RNA_transport bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00022.18 | Actin | 5 | 393 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.