PH01000215G0700's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G65950 : 0.00E+00
Blast annotation: -
2.Location
Scaffold: PH01000215
Strand: +
| Region | Start | End |
| gene | 473704 | 482229 |
| mRNA | 473704 | 482229 |
| exon | 473704 | 474579 |
| exon | 474787 | 474848 |
| exon | 475143 | 475257 |
| exon | 477034 | 477157 |
| exon | 477357 | 477437 |
| exon | 477890 | 478231 |
| exon | 478337 | 478503 |
| exon | 478581 | 479413 |
| exon | 480177 | 482229 |
| CDS | 474233 | 474579 |
| CDS | 474787 | 474848 |
| CDS | 475143 | 475257 |
| CDS | 477034 | 477157 |
| CDS | 477357 | 477437 |
| CDS | 477890 | 478231 |
| CDS | 478337 | 478503 |
| CDS | 478581 | 479413 |
| CDS | 480177 | 481642 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000862 | DBP Transcription_Regulator(from iTAK) Golgi stack, GPI-anchor transamidase complex, |
| coexpression network | CFinderM001270 | lipid metabolic process, |
| coexpression network | CFinderM001725 | cellular protein metabolic process, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11817.7 | Foie-gras_1 | 256 | 524 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.