PH01000223G0830's details annotation
1.Annotation
ICBR annotation: methyltransferase, putative, expressed
Blast result AT2G39750 : 0.00E+00
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000223
Strand: -
| Region | Start | End |
| gene | 555475 | 567737 |
| mRNA | 555475 | 567737 |
| exon | 555475 | 557548 |
| exon | 557719 | 557883 |
| exon | 558553 | 558606 |
| exon | 559021 | 559093 |
| exon | 560496 | 560651 |
| exon | 560906 | 560983 |
| exon | 561377 | 561499 |
| exon | 562788 | 563045 |
| exon | 563533 | 563692 |
| exon | 565231 | 565341 |
| exon | 565723 | 565993 |
| exon | 566082 | 566231 |
| exon | 566650 | 567737 |
| CDS | 557039 | 557548 |
| CDS | 557719 | 557883 |
| CDS | 558553 | 558606 |
| CDS | 559021 | 559093 |
| CDS | 560496 | 560651 |
| CDS | 560906 | 560983 |
| CDS | 561377 | 561499 |
| CDS | 562788 | 563045 |
| CDS | 563533 | 563692 |
| CDS | 565231 | 565341 |
| CDS | 565723 | 565993 |
| CDS | 566082 | 566231 |
| CDS | 566650 | 567351 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001503 | methyltransferase activity, DNA metabolic process, nuclease activity, MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) cell redox homeostasis, Nucleotide_excision_repair |
| coexpression network | CFinderM001504 | Amino_sugar_and_nucleotide_sugar_metabolism GT8 GlycosylTransferases DNA metabolic process, cellular metabolic process, Nucleotide_excision_repair Starch_and_sucrose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03141.15 | Methyltransf_29 | 178 | 672 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008168 | methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.