PH01000227G0940's details annotation
1.Annotation
ICBR annotation: whirly transcription factor domain containing protein, expressed
Blast result AT1G71260 : 6.60E-58
Blast annotation: WHIRLY 2
2.Location
Scaffold: PH01000227
Strand: +
| Region | Start | End |
| gene | 588319 | 593308 |
| mRNA | 588319 | 593308 |
| exon | 588319 | 588507 |
| exon | 589515 | 589600 |
| exon | 589711 | 589808 |
| exon | 589884 | 589976 |
| exon | 590616 | 590710 |
| exon | 591129 | 591220 |
| exon | 591538 | 591626 |
| exon | 592838 | 592939 |
| exon | 593123 | 593308 |
| CDS | 588470 | 588507 |
| CDS | 589515 | 589600 |
| CDS | 589711 | 589808 |
| CDS | 589884 | 589976 |
| CDS | 590616 | 590710 |
| CDS | 591129 | 591220 |
| CDS | 591538 | 591626 |
| CDS | 592838 | 592939 |
| CDS | 593123 | 593242 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000558 | Whirly Transcription_Regulator(from PlantTFDB) COPII_vesicle_coating aminoacyl-tRNA hydrolase activity, intracellular, |
| coexpression network | CFinderM001409 | Whirly Transcription_Regulator(from PlantTFDB) Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis phosphatidylinositol N-acetylglucosaminyltransferase activity, GPI anchor biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Whirly |
| Transcription_Regulator(from PlantTFDB) | Whirly |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08536.10 | Whirly | 54 | 188 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.