PH01000229G1390's details annotation
1.Annotation
ICBR annotation: AMP-binding domain containing protein, expressed
Blast result AT5G63380 : 7.00E-148
Blast annotation: AMP-dependent synthetase and ligase family protein
2.Location
Scaffold: PH01000229
Strand: -
| Region | Start | End |
| gene | 856808 | 860940 |
| mRNA | 856808 | 860940 |
| exon | 856808 | 857189 |
| exon | 857610 | 857712 |
| exon | 857846 | 857913 |
| exon | 858007 | 858152 |
| exon | 858769 | 858785 |
| exon | 858980 | 859173 |
| exon | 859289 | 860940 |
| CDS | 857064 | 857189 |
| CDS | 857610 | 857712 |
| CDS | 857846 | 857913 |
| CDS | 858007 | 858152 |
| CDS | 858769 | 858785 |
| CDS | 858980 | 859173 |
| CDS | 859289 | 860326 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000351 | katanin_complex SAGA-type_complex |
| coexpression network | CFinderM001088 | CBM20 Carbohydrate-Binding_Modules GH77 Glycoside_Hydrolases katanin_complex microtubule_severing SNF2 Transcription_Regulator(from iTAK) Starch_and_sucrose_metabolism 4-alpha-glucanotransferase activity, starch_binding |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00501.27 | AMP-binding | 55 | 461 |
| PF13193.5 | AMP-binding_C | 470 | 545 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.