PH01000232G0190's details annotation
1.Annotation
ICBR annotation: PWWP domain containing protein, expressed
Blast result AT3G09670 : 2.80E-41
Blast annotation: Tudor/PWWP/MBT superfamily protein
2.Location
Scaffold: PH01000232
Strand: -
| Region | Start | End |
| gene | 87979 | 93364 |
| mRNA | 87979 | 93364 |
| exon | 87979 | 88424 |
| exon | 88495 | 88645 |
| exon | 89317 | 89433 |
| exon | 89538 | 89622 |
| exon | 90094 | 90119 |
| exon | 90269 | 93364 |
| CDS | 88231 | 88424 |
| CDS | 88495 | 88645 |
| CDS | 89317 | 89433 |
| CDS | 89538 | 89622 |
| CDS | 90094 | 90119 |
| CDS | 90269 | 92932 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000496 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, Pseudo ARR-B Transcription_Regulator(from iTAK) ubiquitin-dependent protein catabolic process, diphosphomevalonate decarboxylase activity, L,L-diaminopimelate_aminotransferase_activity Citrate_cycle_(TCA_cycle) Pyruvate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00855.16 | PWWP | 75 | 158 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.