PH01000237G0970's details annotation
1.Annotation
ICBR annotation: ras-related protein, putative, expressed
Blast result AT3G18820 : 3.10E-88
Blast annotation: RAB GTPase homolog G3F
2.Location
Scaffold: PH01000237
Strand: +
| Region | Start | End |
| gene | 656350 | 659182 |
| mRNA | 656350 | 659182 |
| exon | 656350 | 657257 |
| exon | 657475 | 657574 |
| exon | 658421 | 658567 |
| exon | 658645 | 658725 |
| exon | 658840 | 659182 |
| CDS | 657205 | 657257 |
| CDS | 657475 | 657574 |
| CDS | 658421 | 658567 |
| CDS | 658645 | 658725 |
| CDS | 658840 | 658989 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001070 | GTnc GlycosylTransferases checkpoint_clamp_complex cell_cycle_checkpoint DNA_damage_checkpoint cullin-RING ubiquitin ligase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00071.21 | Ras | 19 | 168 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0006184 | GTP catabolic process |
| GO:0007165 | signal transduction |
| GO:0007264 | small GTPase mediated signal transduction |
| GO:0015031 | protein transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.