CFinderM001070's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
GTnc GlycosylTransferases0.012121441GFam
checkpoint_clamp_complex0.013534051GO:0030896
cell_cycle_checkpoint0.031001167GO:0000075
DNA_damage_checkpoint0.031001167GO:0000077
cullin-RING ubiquitin ligase complex,0.045480952GO:0031461

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000031G0750carbon-nitrogen hydrolase family proteinAT1G55090 (4.20E-35)
PH01000093G1760-- (-)
PH01000237G0970RAB GTPase homolog G3FAT3G18820 (3.10E-88)
PH01000273G0520alpha-mannosidase 3AT1G30000 (8.00E-156)
PH01000273G0530-- (-)
PH01001112G0070Translation initiation factor SUI1 family proteinAT1G54290 (6.20E-52)
PH01001153G0580Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing proteinAT3G51950 (5.70E-89)
PH01001544G0040Protein of unknown function (DUF707)AT1G61240 (9.00E-113)
PH01001551G0090RNI-like superfamily proteinAT3G07550 (1.00E-73)
PH01001984G0110-- (-)
PH01003093G0180pantothenate kinase 2AT4G32180 (2.00E-61)
PH01005299G0070cullin 1AT4G02570 (0)
PH01008675G0010cell cycle checkpoint control protein familyAT3G05480 (1.80E-74)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000347Pantothenate_and_CoA_biosynthesis
Valine,_leucine_and_isoleucine_degradation
CMGC_CDK-CRK7-CDK9 (from iTAK)
pantothenate kinase activity,
coenzyme A biosynthetic process,
Propanoate_metabolism
beta-Alanine_metabolism
details
CFinderM000639GT4 GlycosylTransferases
proton-transporting V-type ATPase, V0 domain,
sucrose-phosphate phosphatase activity,
magnesium ion binding,
glycolipid_6-alpha-mannosyltransferase_activity
GDP-Man:Man1GlcNAc2-PP-Dol_alpha-1,3-mannosyltransferase_activity
isocitrate dehydrogenase (NAD+) activity,
sucrose biosynthetic process,
glucose-6-phosphate dehydrogenase activity,
tricarboxylic acid cycle,
glucose metabolic process,
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
Pentose_phosphate_pathway
Citrate_cycle_(TCA_cycle)
details
CFinderM000894regulation of ARF protein signal transduction,
phospholipid transport,
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
details
CFinderM001042CK1_CK1 (from iTAK)
protein transport,
Citrate_cycle_(TCA_cycle)
Carbon_fixation_pathways_in_prokaryotes
Endocytosis
details
CFinderM001117LSD Transcription_Regulator(from PlantTFDB)
C2C2-LSD Transcription_Regulator(from iTAK)
details
CFinderM001256checkpoint_clamp_complex
CK1_CK1-Pl (from iTAK)
Nicotinate_and_nicotinamide_metabolism
cell_cycle_checkpoint
DNA_damage_checkpoint
NAD+ synthase (glutamine-hydrolyzing) activity,
NAD biosynthetic process,
details
CFinderM001745GT13 GlycosylTransferases
Golgi membrane,
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
N-Glycan_biosynthesis
Glycerolipid_metabolism
Various_types_of_N-glycan_biosynthesis
Glycerophospholipid_metabolism
transferase activity, transferring acyl groups,
acetylglucosaminyltransferase activity,
protein glycosylation,
details

4.Expression profilings


Show details about module gene expression profiling