Annotation of co-expression genes

PH01008675G0010's details annotation

1.Annotation

ICBR annotation: auxin response factor 75, putative, expressed

Blast result AT3G05480 : 1.80E-74
Blast annotation: cell cycle checkpoint control protein family

2.Location

Scaffold: PH01008675
Strand: +

RegionStartEnd
gene49077206
mRNA49077206
exon49076078
exon61766419
exon66296880
exon69917206
CDS59746078
CDS61766419
CDS66296880
CDS69917172

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001070GTnc GlycosylTransferases
checkpoint_clamp_complex
cell_cycle_checkpoint
DNA_damage_checkpoint
cullin-RING ubiquitin ligase complex,
coexpression networkCFinderM001256checkpoint_clamp_complex
CK1_CK1-Pl (from iTAK)
Nicotinate_and_nicotinamide_metabolism
cell_cycle_checkpoint
DNA_damage_checkpoint
NAD+ synthase (glutamine-hydrolyzing) activity,
NAD biosynthetic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04139.12Rad913241

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000075cell cycle checkpoint
GO:0000077DNA damage checkpoint
GO:0006281DNA repair
GO:0030896checkpoint clamp complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.