PH01000238G0300's details annotation
1.Annotation
ICBR annotation: suppressor of Mek, putative, expressed
Blast result AT3G06670 : 1.00E-101
Blast annotation: binding
2.Location
Scaffold: PH01000238
Strand: -
| Region | Start | End |
| gene | 256996 | 265528 |
| mRNA | 256996 | 265528 |
| exon | 256996 | 257305 |
| exon | 257474 | 257536 |
| exon | 258525 | 258999 |
| exon | 259177 | 259275 |
| exon | 259393 | 259502 |
| exon | 260300 | 260407 |
| exon | 260477 | 260608 |
| exon | 261535 | 261649 |
| exon | 261855 | 261958 |
| exon | 262308 | 262406 |
| exon | 262892 | 262985 |
| exon | 263081 | 263158 |
| exon | 263381 | 263498 |
| exon | 264576 | 265528 |
| CDS | 257282 | 257305 |
| CDS | 257474 | 257536 |
| CDS | 258525 | 258999 |
| CDS | 259177 | 259275 |
| CDS | 259393 | 259502 |
| CDS | 260300 | 260407 |
| CDS | 260477 | 260608 |
| CDS | 261535 | 261649 |
| CDS | 261855 | 261958 |
| CDS | 262308 | 262406 |
| CDS | 262892 | 262985 |
| CDS | 263081 | 263158 |
| CDS | 263381 | 263498 |
| CDS | 264576 | 264789 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000112 | SNF2 Transcription_Regulator(from iTAK) chromatin remodeling, ATP-dependent chromatin remodeling, CE8 Carbohydrate_Esterases nucleic acid binding, helicase activity, 5'-3' exoribonuclease activity, nucleosome binding, GT1 GlycosylTransferases cell wall modification, nucleus, cell wall, nucleobase-containing compound metabolic process, exonuclease activity, |
| coexpression network | CFinderM001017 | calcium-dependent cysteine-type endopeptidase activity, mechanically-gated_ion_channel_activity RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.