Annotation of co-expression genes

PH01000243G0570's details annotation

1.Annotation

ICBR annotation: Ubiquitin family domain containing protein, expressed

Blast result AT2G17190 : 9.00E-107
Blast annotation: ubiquitin family protein

2.Location

Scaffold: PH01000243
Strand: +

RegionStartEnd
gene314630317536
mRNA314630317536
exon314630315637
exon315723315931
exon316017316130
exon316215316273
exon316457316485
exon317072317155
exon317264317536
CDS314932315637
CDS315723315931
CDS316017316130
CDS316215316273
CDS316457316485
CDS317072317155
CDS317264317409

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000569CMGC_Pl-Tthe (from iTAK)
1,3-beta-D-glucan synthase activity,
1,3-beta-D-glucan synthase complex,
membrane,
Regulation_of_autophagy

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00627.30UBA407443

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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