PH01000251G1270's details annotation
1.Annotation
ICBR annotation: adenylyl-sulfate kinase, putative, expressed
Blast result AT2G14750 : 3.50E-58
Blast annotation: APS kinase
2.Location
Scaffold: PH01000251
Strand: +
| Region | Start | End |
| gene | 829760 | 831971 |
| mRNA | 829760 | 831971 |
| exon | 829760 | 830128 |
| exon | 830617 | 830678 |
| exon | 831180 | 831283 |
| exon | 831351 | 831469 |
| exon | 831565 | 831649 |
| exon | 831784 | 831971 |
| CDS | 830063 | 830128 |
| CDS | 830617 | 830678 |
| CDS | 831180 | 831283 |
| CDS | 831351 | 831469 |
| CDS | 831565 | 831649 |
| CDS | 831784 | 831887 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000320 | nicotinate phosphoribosyltransferase activity, nicotinate-nucleotide diphosphorylase (carboxylating) activity, adenylylsulfate_kinase_activity nicotinate nucleotide salvage, omega_peptidase_activity SNARE_interactions_in_vesicular_transport Nicotinate_and_nicotinamide_metabolism Nitrogen_metabolism sulfate assimilation, NAD biosynthetic process, nucleoside-triphosphatase activity, metal ion transmembrane transporter activity, ER to Golgi vesicle-mediated transport, magnesium_ion_transport transmembrane transport, cis-Golgi network, Golgi membrane, |
| coexpression network | CFinderM001010 | RLK-Pelle_PERK-2 (from iTAK) ethylene mediated signaling pathway, endoplasmic reticulum membrane, Plant_hormone_signal_transduction protein histidine kinase activity, Others Transcription_Regulator(from iTAK) two-component sensor activity, protein tyrosine kinase activity, two-component signal transduction system (phosphorelay), EIL Transcription_Regulator(from PlantTFDB) two-component response regulator activity, signal transducer activity, sulfate assimilation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01583.19 | APS_kinase | 34 | 166 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000103 | sulfate assimilation |
| GO:0004020 | adenylylsulfate kinase activity |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.