PH01000252G0020's details annotation
1.Annotation
ICBR annotation: NBS-LRR disease resistance protein, putative
Blast result AT3G07040 : 3.30E-54
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01000252
Strand: +
| Region | Start | End |
| gene | 23528 | 29778 |
| mRNA | 23528 | 29778 |
| exon | 23528 | 25139 |
| exon | 25845 | 27794 |
| exon | 27939 | 29778 |
| CDS | 24305 | 25139 |
| CDS | 25845 | 27794 |
| CDS | 27939 | 27985 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000954 | defense response, ADP_binding acid phosphatase activity, Ubiquitin_mediated_proteolysis acid-amino acid ligase activity, |
| coexpression network | CFinderM001877 | HD-ZIP Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) HB-HD-ZIP Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 172 | 449 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.