PH01000252G0230's details annotation
1.Annotation
ICBR annotation: inhibitor I family protein, putative, expressed
Blast result AT2G38870 : 1.10E-08
Blast annotation: Serine protease inhibitor, potato inhibitor I-type family protein
2.Location
Scaffold: PH01000252
Strand: +
| Region | Start | End |
| gene | 222234 | 222627 |
| mRNA | 222234 | 222627 |
| exon | 222234 | 222627 |
| CDS | 222378 | 222605 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000453 | carbon fixation, response to wounding, Lysine_degradation SET Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00280.17 | potato_inhibit | 13 | 75 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004867 | serine-type endopeptidase inhibitor activity |
| GO:0009611 | response to wounding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.