PH01000254G0870's details annotation
1.Annotation
ICBR annotation: OsCML14 - Calmodulin-related calcium sensor protein, expressed
Blast result AT3G25600 : 2.30E-51
Blast annotation: Calcium-binding EF-hand family protein
2.Location
Scaffold: PH01000254
Strand: -
| Region | Start | End |
| gene | 645326 | 646154 |
| mRNA | 645326 | 646154 |
| exon | 645326 | 646154 |
| CDS | 645566 | 646093 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000178 | cellular glucan metabolic process, xyloglucan:xyloglucosyl transferase activity, cell wall, apoplast, GH16 Glycoside_Hydrolases WRKY Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000310 | Glycine,_serine_and_threonine_metabolism flavin adenine dinucleotide binding, oxidoreductase activity, acting on CH-OH group of donors, Biotin_metabolism oxidation-reduction process, alcohol metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13499.5 | EF-hand_7 | 26 | 87 |
| PF13499.5 | EF-hand_7 | 103 | 164 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.