PH01000255G0130's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G40520 : 9.30E-15
Blast annotation: -
2.Location
Scaffold: PH01000255
Strand: -
| Region | Start | End |
| gene | 93404 | 95386 |
| mRNA | 93404 | 95386 |
| exon | 93404 | 93773 |
| exon | 93832 | 94367 |
| exon | 94426 | 95386 |
| CDS | 93528 | 93773 |
| CDS | 93832 | 94367 |
| CDS | 94426 | 94831 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001040 | proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair, chloride transport, damaged DNA binding, ion channel activity, voltage-gated chloride channel activity, Nucleotide_excision_repair |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.