CFinderM001040's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
proteasomal ubiquitin-dependent protein catabolic process,0.012495117GO:0043161
nucleotide-excision repair,0.013862219GO:0006289
chloride transport,0.013862219GO:0006821
damaged DNA binding,0.021460608GO:0003684
ion channel activity,0.021460608GO:0005216
voltage-gated chloride channel activity,0.021460608GO:0005247
Nucleotide_excision_repair0.048417592KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000066G1320-AT1G35660 (0.00E+00)
PH01000255G0130-AT5G40520 (9.30E-15)
PH01000338G0960-- (-)
PH01000574G0140Protein of unknown function (DUF3411)AT5G24690 (5.00E-131)
PH01000783G0570chloride channel EAT4G35440 (6.00E-114)
PH01002089G0140Kelch repeat-containing F-box family proteinAT1G51550 (1.00E-121)
PH01004033G0010-- (-)
PH01006740G0010Rad23 UV excision repair protein familyAT5G38470 (6.00E-117)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000093NAC Transcription_Regulator(from PlantTFDB)
GH79 Glycoside_Hydrolases
DBB Transcription_Regulator(from PlantTFDB)
details
CFinderM000496cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Pseudo ARR-B Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
diphosphomevalonate decarboxylase activity,
L,L-diaminopimelate_aminotransferase_activity
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
details
CFinderM000884Protein_processing_in_endoplasmic_reticulum
GT48 GlycosylTransferases
HB-other Transcription_Regulator(from PlantTFDB)
HD-ZIP Transcription_Regulator(from PlantTFDB)
Nucleotide_excision_repair
proteasomal ubiquitin-dependent protein catabolic process,
outer membrane-bounded periplasmic space,
1,3-beta-D-glucan synthase complex,
(1->3)-beta-D-glucan biosynthetic process,
nucleotide-excision repair,
details
CFinderM001200GH100 Glycoside_Hydrolases
Lipoic_acid_metabolism
octanoyltransferase activity,
glycopeptide_alpha-N-acetylgalactosaminidase_activity
lipoate biosynthetic process,
Protein_export
cellular protein modification process,
serine-type peptidase activity,
details
CFinderM001311Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
serine-type peptidase activity,
CAMK_CDPK (from iTAK)
histone modification,
phospholipid biosynthetic process,
aromatic amino acid family biosynthetic process,
phosphatidylserine decarboxylase activity,
3-deoxy-7-phosphoheptulonate synthase activity,
details
CFinderM001388Protein_processing_in_endoplasmic_reticulum
GT48 GlycosylTransferases
Nucleotide_excision_repair
outer membrane-bounded periplasmic space,
1,3-beta-D-glucan synthase complex,
proteasomal ubiquitin-dependent protein catabolic process,
(1->3)-beta-D-glucan biosynthetic process,
nucleotide-excision repair,
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
glycerol ether metabolic process,
details
CFinderM001481details
CFinderM001482Protein_processing_in_endoplasmic_reticulum
details

4.Expression profilings