Annotation of co-expression genes

PH01000783G0570's details annotation

1.Annotation

ICBR annotation: chloride transporter, chloride channel family, putative, expressed

Blast result AT4G35440 : 6.00E-114
Blast annotation: chloride channel E

2.Location

Scaffold: PH01000783
Strand: -

RegionStartEnd
gene418424424644
mRNA418424424644
exon418424418752
exon419265419731
exon420198420395
exon420872421150
exon421429421516
exon422278424644
CDS418489418752
CDS419265419731
CDS420198420395
CDS420872421150
CDS421429421516
CDS422278422403

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001040proteasomal ubiquitin-dependent protein catabolic process,
nucleotide-excision repair,
chloride transport,
damaged DNA binding,
ion channel activity,
voltage-gated chloride channel activity,
Nucleotide_excision_repair

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00654.19Voltage_CLC101431

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005216ion channel activity
GO:0005247voltage-gated chloride channel activity
GO:0006821chloride transport
GO:0016020membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.