PH01000574G0140's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G24690 : 5.00E-131
Blast annotation: Protein of unknown function (DUF3411)
2.Location
Scaffold: PH01000574
Strand: +
| Region | Start | End |
| gene | 118921 | 128147 |
| mRNA | 118921 | 128147 |
| exon | 118921 | 119998 |
| exon | 122119 | 122280 |
| exon | 122379 | 122471 |
| exon | 122556 | 122671 |
| exon | 123885 | 123983 |
| exon | 124071 | 124376 |
| exon | 124482 | 124646 |
| exon | 126290 | 128147 |
| CDS | 119915 | 119998 |
| CDS | 122119 | 122280 |
| CDS | 122379 | 122471 |
| CDS | 122556 | 122671 |
| CDS | 123885 | 123983 |
| CDS | 124071 | 124376 |
| CDS | 124482 | 124646 |
| CDS | 126290 | 126554 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000496 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, Pseudo ARR-B Transcription_Regulator(from iTAK) ubiquitin-dependent protein catabolic process, diphosphomevalonate decarboxylase activity, L,L-diaminopimelate_aminotransferase_activity Citrate_cycle_(TCA_cycle) Pyruvate_metabolism |
| coexpression network | CFinderM001040 | proteasomal ubiquitin-dependent protein catabolic process, nucleotide-excision repair, chloride transport, damaged DNA binding, ion channel activity, voltage-gated chloride channel activity, Nucleotide_excision_repair |
| coexpression network | CFinderM001481 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11891.7 | RETICULATA-like | 151 | 320 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.