PH01000255G0380's details annotation
1.Annotation
ICBR annotation: tRNA methyltransferase, putative
Blast result AT3G56120 : 1.00E-124
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000255
Strand: -
| Region | Start | End |
| gene | 253975 | 261722 |
| mRNA | 253975 | 261722 |
| exon | 253975 | 254372 |
| exon | 254837 | 254956 |
| exon | 255134 | 255318 |
| exon | 257867 | 257953 |
| exon | 258045 | 258567 |
| exon | 259094 | 259167 |
| exon | 259625 | 259729 |
| exon | 260105 | 260202 |
| exon | 260322 | 261722 |
| CDS | 254250 | 254372 |
| CDS | 254837 | 254956 |
| CDS | 255134 | 255318 |
| CDS | 257867 | 257953 |
| CDS | 258045 | 258567 |
| CDS | 259094 | 259167 |
| CDS | 259625 | 259729 |
| CDS | 260105 | 260202 |
| CDS | 260322 | 260425 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001229 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02475.15 | Met_10 | 98 | 261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009019 | tRNA (guanine-N1-)-methyltransferase activity |
| GO:0016740 | transferase activity |
| GO:0030488 | tRNA methylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.