PH01000258G0700's details annotation
1.Annotation
ICBR annotation: helicase, putative, expressed
Blast result AT1G03190 : 0.00E+00
Blast annotation: RAD3-like DNA-binding helicase protein
2.Location
Scaffold: PH01000258
Strand: +
| Region | Start | End |
| gene | 460924 | 471439 |
| mRNA | 460924 | 471439 |
| exon | 460924 | 465523 |
| exon | 465704 | 465786 |
| exon | 465881 | 466284 |
| exon | 466374 | 466567 |
| exon | 466782 | 466962 |
| exon | 467952 | 468076 |
| exon | 469088 | 469177 |
| exon | 469399 | 469477 |
| exon | 469592 | 469668 |
| exon | 470272 | 470380 |
| exon | 470699 | 471439 |
| CDS | 464700 | 465523 |
| CDS | 465704 | 465786 |
| CDS | 465881 | 466284 |
| CDS | 466374 | 466567 |
| CDS | 466782 | 466962 |
| CDS | 467952 | 468076 |
| CDS | 469088 | 469177 |
| CDS | 469399 | 469477 |
| CDS | 469592 | 469668 |
| CDS | 470272 | 470380 |
| CDS | 470699 | 470809 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000677 | UMP biosynthetic process, 'de novo' pyrimidine base biosynthetic process, purine ribonucleotide biosynthetic process, histidyl-tRNA aminoacylation, Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, dihydroorotate oxidase activity, dihydroorotate dehydrogenase activity, translation_initiation_factor_binding N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, histidine-tRNA ligase activity, nucleotide-excision repair, proteolysis, ATP-dependent DNA helicase activity, translational initiation, nucleobase-containing compound metabolic process, RNA-dependent DNA replication, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06733.14 | DEAD_2 | 72 | 259 |
| PF06777.10 | HBB | 273 | 415 |
| PF13307.5 | Helicase_C_2 | 527 | 700 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Basal transcription factors | DNA excision repair protein ERCC-2 [EC:3.6.4.12] | ko03022 | K10844 |
| Nucleotide excision repair | DNA excision repair protein ERCC-2 [EC:3.6.4.12] | ko03420 | K10844 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003677 | DNA binding |
| GO:0004003 | ATP-dependent DNA helicase activity |
| GO:0005524 | ATP binding |
| GO:0005634 | nucleus |
| GO:0006139 | nucleobase-containing compound metabolic process |
| GO:0006289 | nucleotide-excision repair |
| GO:0008026 | ATP-dependent helicase activity |
| GO:0016817 | hydrolase activity, acting on acid anhydrides |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.